Organism: Tropheryma_whipplei_Twist
Prediction method: PS00013 prosite pattern
Number of proteins predicted : 16

>gi|28493023|ref|NP_787184.1| iron (III) dicitrate ABC transporter substrate-binding protein [Tropheryma whipplei str. Twist]  [1-18]
MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGWS
DAEAALAVGIKPVAVYDWISFGNKGVGPWAEGLFGDVKPEVISRGTDGLNWEQIHNLKPD
LILNVRSNNDEKTYKRLSQIAPTVYGPPGTKSWVLNWRDQQRQVAKALGRVKEGEEAIKK
TEKAIKDAQDPLYRGLKGAFVAKFAEYGVYLPGDGRWDLMQELGFTLEPKINELPKAGFY
AKIPTDKLSWVDTDVLIVISIGTDDITKDALLSSLKAAKEGRVIYANKDLANVLSASSAL
SIREAIKRISDKLREIAKKLRNK
>gi|28493024|ref|NP_787185.1| iron ABC transporter substrate-binding protein [Tropheryma whipplei str. Twist]  [1-18]
MFGRKLLGALVALSLLTGCFGGKGDSESSSVLSKVETVFGEVTIPRPKGHDLRVVALGRA
DAEAALAVGIKPVAVLDAFNIGGKGVGPWAEGLFGDVKPTVMSFSTDGLNWEQIKAFKPD
VILDVRSKNDEKTYKRLSQIAPTVYGPKNSKDYQPYQIPWRDQQRQVAKALGRVKEGEEA
IKKTEKAIKDAQDPLYRGLKAALVVQRPSGYGVFAESTRQWDLIRELGFTLEPRVTELFD
GRHAGKDIPSGKLNLIDTDVIVVTVKRGIRKAANHNDPLIASLKASKEGRIIYGSDEFNL
ALIAGSVLSIPEAIKFLSDKLREIAKKLRNK
>gi|28493103|ref|NP_787264.1| dipeptide ABC transporter substrate-binding protein [Tropheryma whipplei str. Twist]  [1-22]
MRKGFSRVFTFTAVSAVLFVTACFGGKPTDSYVNVNTTKISTGLVPANSNELSAHRILSM
LFSGLVYIDKDARIQNEVAKSIETADNRVWTITLREDFKFSNGEKVTAKSFVDAWNFAAK
ISNAMGNRDFLGNIEGFTEKGDTDLSGLKILDEYKFRVILKSPNRNFVAKLSYSVFWPLP
SDAYKDIRAFGLKPIGNGPYSLVSFTQDVEAVLKKNPDYKGPRQPRNSGLRYKIYSDPGP
AYADVLSDSSDVTDIIPPNAQEKFQSDFPSRWIRREIAATIYIAIPGYVAHFAFDREGIL
RRKAVSMAINRQDIADKIYHGARVPARDFTSPSVLGYKAGLPGSDVLKYDPERAKQLWAQ
ADAISPWGSGVLYLNFAATRGDKALFEALANSIKNVLGIEVQAYPNTDWKANLLHGQQTK
QPFRIGWAADWPAIDTYLGSLFHSQASNNYYEFRNAEYDSLLVKAAEALTLPKAQDYYDK
LQEILFQNMPVVPLFYDRGGLVWSKNVSNVESNWVGIPVYYLITKG
>gi|28493104|ref|NP_787265.1| dipeptide ABC transporter substrate-binding protein [Tropheryma whipplei str. Twist]  [1-23]
MKYMNSRFKFFAAFVPVVLFMAACFGGSPGVKGKEMRFGSCEPQTALLPGSVRDECGSGI
VTNLFVGLVTRDREGNLINEVAESIDTQDNLTYVIKVKKDWKFSNGEKVTAKSFVDAWNF
TAKKSNAQSNRDDLKYIDGYSADLDGDLSGLKITDEFTFTVKLNKKLNDFSERLSNTTAF
FPLPSVAYQDIKKFGQNPIGNGPYLLHDRRKNVSWSYRPNRDYHGYASQFPIPPSVRVTV
YQSGSAKYADYLAGNLDLVDVPQENIETYKQDSEGRHIEGVTSVVSYVGITANTPGFELN
TEAGKLRRRALSLAIDRQEMGDKLYHGLRFPATGFFSSAFFPNYADLPGSDVLKFNLEKA
KEFWAEAEKLSPYPRRQIDFFYNVDGGHKIWIDAVVNQLKNGLGITNIIPKPVPTFREFL
DLVDQDDFSGFFRSGWQTGYIAAPSIETLFTSDGSNNSSRYRNPEFDKLAVRAVEAKASE
SASLYKELLGILLKDLPLIPLFGYKDALVYGKDVRGIKLNKRGIVDTSDMIRE
>gi|28493210|ref|NP_787371.1| cytochrome c oxidase subunit II [Tropheryma whipplei str. Twist]  [1-31]
MRKFLTDLPVIRPIRSLLVVFVLTLSLVFVGCTTQQMHGFLPGFVEGESSVTETTQVYSD
LWFNAWFVLIVIGILVWAMVVVAVVVFRRKRSDTTLPPQVQYNLPVETLLTGLPLILVAV
FFVFSIRVSDAVNLPKPADVHIGVIGKQWAWDFVYFDSNTYFPGLQAQYIESSPGKVDES
KLPVLYLPVNKKVEIDLRSRDVVHSFWIIDFLYKRDIVPGLTNRIYFTPTRIGEYRGKCA
EFCGEFHSAMLFVVKVVTQEEYKKHMADLAGMGYIGTVGWESLDPASKKH
>gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist]  [1-22]
MAISTRGQFDRAGSVSVCICIACARGLALIASLSGLLEAVRPGSVVVNMHGIGFLVRVPQ
SFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISGVGPRVALAILSVLTP
AEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGKLTSVPLENRKQEQAVDRSAEIVQA
LIGLGWQRQESAAAVESVLEKDQSLTMPEILRNALRYLAKQE
>gi|28493286|ref|NP_787447.1| putative FKBP-type peptidyl-prolyl cis-trans isomerase [Tropheryma whipplei str. Twist]  [1-19]
MVSLKFVVLTFGLVALLSGCADQGIKVDGKFGTPVRVSIETVVKVKDVTRTVIDEGDGPE
LKSGDLVAYQVAYFNGTTGDRIKPGEFGTARGISTYTVGQGAYLDKILQKVKVHSRILAQ
VPGALLWGSDSRPEGVGERDNAVVVLDVLNVIATKLNGPKKPSPPGLPTVVDSANGPKIL
PVTAPAPQALSVVTLIEGSGHPVKPTDKVTVHYVGALWSGKVFDSSWNRRAPAEFLLDGL
IKGVKDGLVGAKVGSRLLIVVPPALGYGDKAQGDIPANSTLIFVFDILMATSRN
>gi|28493295|ref|NP_787456.1| sugar ABC transporter substrate-binding protein (L-arabinose/D-xylose) [Tropheryma whipplei str. Twist]  [1-28]
MKGFGMSISKGLFRAVLFTAAASLFLMSCLGGGRDESKTGGVSYTKGFPSDSLIGVAITK
KTSQNQVDAGNFFEELLKDAGFKSKVVFANNGVSEQQSQIDNMIASGAKVIVVNAVDSSL
LGPQLKRARQAGVIVFDYDRLLENTKDVDFYVTYNARTVGILQANALLQGLEKKKPGGPW
NIELFAGSPDDSNSRIFFDSAMSVLNEKIKSGKLIVVSGQTDFAKAVTQDWSAENAQKRM
DVLLSTYYNTKQLDGVLGPNDVLARAILRSVELAGKPVPVVVGQDAEEPSLKLIAAGKQY
STVAKSTRALVEATVKAIKQLADKKLPETNSKSNNGEVEIPTILLTPKIITKENLDTIYK
K
>gi|28493317|ref|NP_787478.1| hypothetical protein TWT350 [Tropheryma whipplei str. Twist]  [1-33]
MSPGVSRSLYLPLKIRLIMRVAILVICTFASAGCSLLTPAATTITYSAGVGASANLGTIL
IRNIFIVADDSGHGFLVMTVFTDKRQTITAETSSSKQVELFLSEGSNVFGPKVKVTIDNV
GAAPGDYVELTLSSKTSIKKVIAPVLSSEFPDYKYITQEESKPSHAFGRRNSNQIQGIV
>gi|28493322|ref|NP_787483.1| phosphate transport system substrate-binding protein [Tropheryma whipplei str. Twist]  [1-22]
MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPG
VTVNYEPQGSGAGRRAFLSGAVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAI
AYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGIELPNKKITAVHRSDNSGTTE
NFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL
ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACV
GYKKGNKDAIFSYLKFILSEKAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA
>gi|28493332|ref|NP_787493.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str. Twist]  [1-23]
MPNPRDIGSVLVIGSGPITIGQACEFDYSGTQACRVLKEEGIRVILLNSNPATIMTDPEF
SDATYIEPMTIEVLEAILDKERPDAVLPTLGGQTALNLAMQLHNKGLLEKYGTQLIGATP
EVIARGENREMFRHIVLSSGAEVATSEVITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSS
LVHTESELVDSVKQGIEASPNGQVLLEESIVGWKEYELELMRDVAGNTVIVCSIENIDPV
GVHTGDSVTVAPAMTLTDREYQNLRNIAIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEV
NPRVSRSSALASKATGFPIAKLAAKLALGYRLHEIKNDITKKTFASFEPSLDYVAVKIPL
FAFEKFPKANPELTTSMKSVGEVMAIGRNFTTALQKAMRSLDQPHMCFHWQPFESPGHSI
ASDVPDPREYYLDFIRTPLPSRLVAIQQALRFGASIDEVHEASRIDKWFVSQIDLINKTA
DSLKDLSMDCLSRAKMHGFSDRQIADLLRIDEEDVRKRRSALGIVPVYKTVDTCAGEFPA
VTPYYYSSYDSENEAIPSPSRKVIIIGSGPNRIGQGIEFDYSCVHAAMALSGMGIETVMI
NCNPETVSTDYDTSDRLYFEPLTLEDVLEVISVEQRNGDLLGVIAQLGGQIPLSLAKSIQ
HEGIPILGTSPESIDLAENRDLFSNLLRSLNLPTYEHRTVSNKDEAIIAANKMGFPVLLR
PSFVLGGRGMKVIHDSQALEDYFNTFHAVDSEHPLLIDKFLSDAIEVDVDALYDKHELFI
GGIMEHIEEAGIHSGDSSCTIPPVTLGKNIVNQIVSTTHAIARTLSVLGPVNIQFAIASG
ILYVLEANPRSSRTLPFVSKATGIPLAKAATRIMLGHTIEDLQREGLLPQRDMRFFNPTD
PIAVKEVILPFKRFRTKSGEFLDTLLGPEMQSTGEVMGIGPTFPIAFAKSQQAAFSELPR
TGAIFVSVADHDKRKVVLPAMRFYKLGFKIFATSGTADTLRRFGIDVVTIQKFSEAKKTS
SRSVVDLIREGRISLVINTPSGGVSIADGYEIRVTALACEIPVFTTISEMNAAVISLESG
SHEIASLQELYSSRARSAENLCG
>gi|28493371|ref|NP_787532.1| hypothetical protein TWT404 [Tropheryma whipplei str. Twist]  [1-33]
MPWERVASVFDLPAVQQALIMSAGVIVSVFIASCITRSSVKKLLKRDAILARKHAAECLI
DTFLEFRNQYSLEENKRNSDQTFERCTMHIAIMPQYGAKLLVDWAGQIAGEVRRATLNGD
TDAITYEFRDRVALWVKNPRKATKGIREDISRFRSENPSYRPLTGKVNTNDEENWHPQEP
ITDLAGADTVKAGQDNNVASEPYRMRPGFDTAARDILRQVKDIQAGGK
>gi|28493528|ref|NP_787689.1| branched-chain amino acid ABC transporter substrate-binding protein [Tropheryma whipplei str. Twist]  [1-21]
MNKLRVRVLFAASAALLFFSGCFGSGDNKSSAEHIVLPKVTAPVSFKNALFPAGDGKAVC
PKGLSIAYVGIVTGPNAAFGKSINEAFQLAVKQHNDNNPGCQVTGKVFDTEGSPDKAPGV
VAQVIGDSSIVAVLGPAFSGENQAVGGIFETARLVHITPSATLPTLSSHGWKTFFRAAST
DLEQSTGVIALLEKLEAKKTFVVSDDSAYGKFLGDLVKKGVDLAGSDGIITGSRDFSSVV
AKVVSSGADSVFFAGYYPEAAAFFTQLRGAGFNGYLVVPDGSLDRNLSKLAGQAAVGVYA
VCPCTDDSQVAGFGDAMKKAYGHYPGIYSSSAYDVTTILLRGIDSGRTSRSSLLDWVRGY
DAYGVSGHYKFKANGDLQHTRLYFYRFDESGAPVLVGE
>gi|28493640|ref|NP_787801.1| hypothetical protein TWT673 [Tropheryma whipplei str. Twist]  [1-23]
MKRPAAVSVAGGLTGFVGGAVSGCVLGGRLVDDLVNGFNAGFNAVGDFVGKLFG
>gi|28493660|ref|NP_787821.1| peptidase [Tropheryma whipplei str. Twist]  [1-20]
MSTFYKTAAGLVVSALLLSGCFWTPAKNTSSVLSGPLHEKDVPEALRSYYDQTPVWSACY
VGLECTRIKVPLNWDNPAGKNIEIAVARQPIRDTTIGYIFYNPGGPGAGVIDIFSGGHIP
ARPKVAGKYSLVAVDPRGVGESSKVLCYTGRDKDKFLFGASKFPYKSRARAHERDVDFAA
FIDACKRGTGDLLGFVDTVQTAKDFDVIRSVLGSPKFNYLGVSYGTYLGGIYATLFPKKV
GRMVLDSPFPNDLPSDVITAKQLEGFEKSLHAFIDDCLTWKAVCPFTKTRALAERKLIET
TNRLNLKPIPLGDGLVFDGDVFLEGILVPLYSRSSWGILRTALREFFKGNDPKRLFGFVK
QYYGRKKDGSYDNSMEAQLAISCLDNRGDMKVHIPTSGEVKKIAPVFSNLYDPSFDSCQK
WPVKRTGKVLELNARAADNTILVLAASGDNATPYQWAKRFVSYLGKAHMLTRHGQGHGSY
RRGNKCIDSAVDTYFLDGKIPTETDCQPNKQG
>gi|28493706|ref|NP_787867.1| hypothetical protein TWT739 [Tropheryma whipplei str. Twist]  [1-28]
MKKSREYIRPLELVGLAGVMGLFVAFTACITTRQIRYALIFGGVAFIVTLVIISTLTISI
NFDSNKDRKSGR

Letters in green indicate the fragment of the protein where the prediction was succesful.